AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical […]
A Mass Difference Calculator with a graph for MassLynx. Bring in a text file with reference masses and then paste in or browse in another file with a list of mass/intensity pairs. Then look at the best matching points and see what the difference between reference and data comes out as. This is a companion […]
DBSolveOptimum is a stand-alone software tool for construction and analysis of mathematical models of biological systems. It is a succession and extension of DBSolve 5 and DBSolve 7, which were popular tools for systems biology. In addition to the capabilities of these software packages, DBSolveOptimum is implemented with new tools for extended data analysis and […]
The distribution includes 3 tools: * GeneTack — predicts frameshifts in relatively short DNA fragments with all the genes located on the direct strand only * GeneTack-GM — genome-wide frameshift prediction (the input genome sequence should be long enough to estimate the HMM parameters) * mod2hmmdef.pl — converts .mod file generated by GeneMarkS to the […]
SwisTrack 4 is a powerful software for tracking robots, humans, animals and objects using a camera or a recorded video as input source. It contains interfaces for USB, FireWire and GigE cameras, as well as AVI files. You’re probably paying too much for cell phone service. Wirefly compares hundreds of plans to help you save. […]
MrBayes is a program for the Bayesian estimation of phylogeny. The development site has been moved to GitHub: https://github.com/NBISweden/MrBayes Cloudbased voice solutions are common in enterprise networks and frustrating for operations teams to manage. Simplify VoIP monitoring by having a proactive analysis of on-prem, hybrid and UCaaS voice services. Try the ThousandEyes VoIP monitoring solution […]
SoundRuler is a tool for acoustic analysis, graphing and teaching. It interactively recognizes and measures 35 temporal and spectral properties of each sound in a file. It also features several measurement, graphing and didactic modules. The SourceForge Speed Test measures Latency/Ping, Jitter, Download Speed, Upload Speed, Buffer Bloat, and Packet Loss. Upon completion, you can […]
INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to ‘Files’. Also refer to ‘Wiki’ for details. Today’s small-to-medium-sized (SMB) businesses and large enterprises are saving on their monthly communications costs by making one simple decision: […]
MonaLisa uses Petri net representation to model and analyse biochemical networks. Here, all reactions of a pathway are modeled by their metabolites and reactions. These are represetend by different kind of vertices, metabolites as circles and reactions as rectangles. The Petri net formalism offers a rich variety of mathematical anaylisis aproaches to check the model […]
Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT. If you are like the rest of our user community, your IT […]