The Ontology for Biomedical Investigations (OBI) provides an ontologically well-engineered, integrated set of generic and domain-specific terms for use by different communities, from across the biosciences, using any of a variety of technologies. If you are like the rest of our user community, your IT team is busy. With pressure to deliver on-time projects, you […]
mTRF Toolbox is a MATLAB toolbox that permits the fast computation of the linear stimulus-response mapping of any sensory system in the forward or backward direction. It is suitable for analysing EEG, MEG, ECoG and EMG data. The forward model, or temporal response function (TRF), can be interpreted using conventional analysis techniques such as time-frequency […]
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. Cloudbased voice solutions are common in enterprise networks and frustrating for operations teams to manage. […]
Background: Multiplex PCR, defined as the simultaneous amplification of multiple regions of a DNA template using more than one primer set (comprising a forward primer and a reverse primer) in one tube, has been widely used in clinical and environmental microbiology studies. However, primer design for multiplex PCR is still a challenging problem and several […]
SBEVSL is a collaborative project between Dowling and RIT on the development of a Structural Biology Extensible Visualization Scripting Language, so that users can move freely among various molecular graphics tools, such as rasmol, pymol, raster3d, etc. The SourceForge Speed Test measures Latency/Ping, Jitter, Download Speed, Upload Speed, Buffer Bloat, and Packet Loss. Upon completion, […]
This currently hosts two projects created and maintained by Adam English. PBJelly – the genome upgrading tool. PBHoney – the structural variation discovery tool Both are contained within the PBSuite code found in downloads. —– PBJelly —– Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio […]
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version “MDS_command_line_Vxx.zip” clicking “Browse All Files” please find miRPlant […]
Advanced detection, classification and localization (DCL) of marine mammals and passive acoustic monitoring (PAM). Code is being developed as Matlab routines, interfaces for Ishmael (http://www.bioacoustics.us/ishmael.html), and in other formats. 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 129 Reviews Unrivaled value & reliability in one solution Unlimited Calls/SMS/Conferencing/Fax […]
PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London. […]
We developed a systematic algorithmic solution for quantitative drug sensitivity scoring (DSS), based on continuous modeling and integration of multiple dose-response relationships in high-throughput compound testing studies. License: The DSS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within […]