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DyMMM

Posted on by Robin Ding Leave a comment Bio-Informatics, Ecosystem Sciences, Statistics
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The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework.

Please use the following citation for bibliographical purposes:
Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal.

Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.

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Website https://sourceforge.net/p/dymmm/wiki/Home/
Tags
License Creative Commons Attribution License
Features
  • dynamic community metabolic modeling
  • cobra-toolbox integration
  • matlab integration