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High-Throughput Tabular Data Processor

HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf).
HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Files in different supported formats can be processed at the same time. The processed data can be exported as tab delimited file.

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Website https://htdp.sourceforge.io
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Features
  • works on any character-delimited column data (e.g. BED, GFF, GTF, WIG, VCF)
  • merge tabular data files vertically and horizontally
  • merge any tabular data files using genome location or common column(s)
  • unlimited filtering and data reduction capabilities
  • different files with regards to format and content can be analyzed at the same time