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raxmlGUI

Posted on by Robin Ding Leave a comment Bio-Informatics
0.0

A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) – raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI: 10.1007/s13127-011-0056-0

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Website http://sites.google.com/site/raxmlgui
Tags
License GNU General Public License version 2.0 (GPLv2)
Platform Linux Mac Windows
Features
  • *version 1.5* adds the possibility to run analyses through CIPRES Science Gateway
  • The GUI includes RAxML executables
  • Multiplatform compatibility (Mac OS, Windows, Linux)
  • Requires Python 2.6, 2.7
  • Intuitive interface for data partitioning, and outgroup selection
  • Model selection for DNA, amino acid, binary, and multistate alignments
  • Automatic conversion NEXUS to PHYLIP (and vice versa)
  • Import FASTA files
  • Ancestral state reconstruction
  • "Bootstopping" function (Pattengale et al. 2010)
  • Interactive exclusion of sites
  • Combining multiple alignments with automatic partitioning
  • Interactive definition of topological constraints
  • Robinson-Foulds pairwise distances
  • Per-site likelihoods