We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing long video sequences acquired by either light microscopy or digital holography microscopy (DHM). Our program finds the 2D particle center position using an isosceles triangle transform and the axial position by a fast implementation of Rayleigh-Sommerfeld numerical reconstruction algorithm using a one dimensional radial intensity profile.
*Updates v1.1: 2017/11/21- Bug fix & Blob detection functions.
Please visit our homepage for more information:
http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/
*Please cite our work using the following information:
Zhang, H., T. Stangner, K. Wiklund, A. Rodriguez, and M. Andersson. 2017. UmUTracker: A versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data. Comput. Phys. Commun. 219: 390–399.
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Website | https://umutracker.sourceforge.io |
Tags | Physics |
License | GNU General Public License version 3.0 (GPLv3) |
Platform | Windows |
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