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PDB2PQR

PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format.

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Website http://pdb2pqr.sourceforge.net
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Features
  • Web interface to APBS with online visualization
  • Support for pKa calculations and biomolecular structure completion