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TASSEL

TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics.

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Website http://www.maizegenetics.net/tassel
Tags
License
Platform
Features
  • Association Mapping by Mixed Model
  • Association Mapping by GLM
  • Linkage disequilibrium estimates
  • Q-Q plots and Manhatten plots