TomoJ

TomoJ is a plug-in of ImageJ.
It allows the preprocessing, registration of tilt series before performing 3D reconstructions.
registration was described in BMC Bioinformatics. 2009 Apr 27;10:124.”Marker-free image registration of electron tomography tilt-series.” Sorzano CO, Messaoudi C, Eibauer M, Bilbao-Castro JR, Hegerl R, Nickell S, Marco S, Carazo JM.
reconstruction part was described in BMC Bioinformatics. 2007 Aug 6;8:288. “TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy.”Messaoudii C, Boudier T, Sanchez Sorzano CO, Marco S.

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